Sadaf Tafazoli, Yue Lu, Renjie Wu, Thirumalai Vinjamoor Akhil Srinivas, Hannah Dela Cruz, Ryan Mercer, Eamonn Keogh (2024) C22MP: the marriage of catch22 and the matrix profile creates a fast, efficient and interpretable anomaly detector https://doi.org/10.1007/s10115-024-02107-5
 

Arindam Dutta, Rohit Lal, Yash Garg, Calvin-Khang Ta, Dripta S. Raychaudhuri, Hannah Dela Cruz, Amit K. Roy-Chowdhury (2024) POSTURE: Pose Guided Unsupervised Domain Adaptation for Human Body Part Segmentation arXiv:2407.03549v1 [cs.CV] 04 Jul 2024
 

Hurd M., Pino J., Jang K., Allevato M.M., Vorontchikhina M., Ichikawa W., Zhao Y., Gates R., Villalpando E., Hamilton M.J., Faiola F., Pan S., Qi Y., Hung Y.-W., Girke T., Ann D., Seewaldt V., and Martinez E. (2023) MYC acetylated lysine residues drive oncogenic cell transformation and regulate select genetic programs for cell adhesion-independent growth and survival. Genes Dev., 37, 865-882. PMID: 37852796
 

Bryce da Camara, Noa Bar Ziv, Veronica Carta, Gabriela A. Mota Orozco, Hoi-Ting Wu, Prof. Ryan R. Julian, Prof. Richard J. Hooley Gated, Selective Anion Exchange in Functionalized Self-Assembled Cage Complexes Chemistry Europe (2022) https://doi.org/10.1002/chem.202203588
 

Hannah L. Dela Cruz, Esther L. Dela Cruz, Cody J. Zurhellen, Herbert T. York, Jim A. Baun, Joshua L. Dela Cruz, Jay S. Dela Cruz. New insights underlying the early events of dopaminergic dysfunction in Parkinson’s Disease BioRxiv (2020) doi: https://doi.org/10.1101/2020.09.27.313957
 

Alonso, V., Nasrolahi, S., & Dillman, A. R. (2018). Host-Specific Activation of Entomopathogenic Nematode Infective Juveniles. Insects, 9(2), 59. doi:10.3390/insects9020059. PMCID: PMC6023527 PMID: 29865224
 

Erudaitius D, Mantooth J, Huang A, Soliman J, Doskey CM, Buettner GR, Rodgers. VGJ. Calculated cell-specific intracellular hydrogen peroxide concentration: Relevance in cancer cell susceptibility during ascorbate therapy. Free Radic Biol Med. 2018 May 20;120:356-367. doi: 10.1016/j.freeradbiomed.2018.03.044. Epub 2018 Mar 27. PubMed PMID: 29601946; PubMed Central PMCID: PMC6160292.
 

Allevato, M., Bolotin, E., Grossman, M., Mane-Padros, D., Sladek, F. M., & Martinez, E. (2017). Sequence-specific DNA binding by MYC/MAX to low-affinity non-E-box motifs. PLoS ONE, 12(7), e0180147. PMCID: PMC5515408
 

Cipriano, A. F., Sallee, A., Tayoba, M., Cortez Alcaraz, M. C., Lin, A., Guan, R.-G., … Liu, H. (2017). Cytocompatibility and early inflammatory response of human endothelial cells in direct culture with Mg-Zn-Sr alloys. Acta Biomaterialia, 48, 499–520. PMCID: PMC5873597
 

Bennett, K.M., Parnell, E.A., Sanscartier, C., Parks, S., Chen, G., Nair, M.G., and Lo, D.D. (2016) Induction of colonic M cell during intestinal Inflammation. Am. J. Pathology. 186:1166-1179. PMCID: PMC4861757
 

Xu, M., Gonzalez-Hurtado, E., and Martinez, E. (2016). Core promoter-specific gene regulation: TATA box selectivity and Initiator-dependent bi-directionality of serum response factor-activated transcription. Biochim. Biophys. Acta-Gene Reg. Mech. 1859:553-563. PMCID: PMC4818687
 

Harter, M.R., Liu, C.-D., Shen, C.-L.,Gonzalez-Hurtado, E., Zhang, Z.-M., Xu, M., Martinez, E., Peng, C.-W., and Song, J. (2016) BS69/ZMYND11 C-terminal domains bind and inhibit EBNA2. PLOS Pathogens, 12:e1005414. PMCID:  PMC4742278 
 

Hernandez, A., Donovan, V., Grinberg, Y.Y., Obenaus, A., Carson, M.J. (2015) Differential detection of impact site versus rotational site injury by magnetic resonance imaging and microglial morphology in an unrestrained mild closed head injury model. J. Neurochemistry. 135:1-11. doi: 10.1111/jnc.13402 PMID: 26806371
 

David, C.N., Frias, E.S., Elix, C.C., McGovern, K.E., Walker, A.M., Eichler, J.F., Wilson, E.H. (2015)  Antitumor activity of a polypyridyl chelating ligand: in vitro and in vivo inhibition of glioma. ASN Neuro. doi: 10.1177/1759091415572365. PMCID: PMC4366422 
 

Maduro, M., Maduro, G., Choi, H., Carranza, F., Wu, A., Rifkin, S.A. (2015) MED GATA factors promote robust development of the C. elegans endoderm. Dev Biology, 404:66-79. PMCID: PMC4469534
 

Martins-Green M, Adhami N, Frankos M, Valdez M, Goodwin B, Lyubovitsky J, Dhall S, Garcia M, Egiebor I, Martinez B, Green HW, Havel C, Yu L, Liles S, Matt G, Destaillats H, Sleiman M, Gundel LA, Benowitz N, Jacob P 3rd, Hovell M, Winickoff JP, Curras-Collazo M. (2014) Cigarette smoke toxins deposited on surfaces: implications for human health. PLoS One.  Jan 29;9(1):e86391. PMID: 24489722; PMCID: PMC3906039 
 

Ghang, Y.J., Lloyd, J.J., Moehlig, M.P. Arguelles, J.K., Mettry, M., Zhang, X., Julian, R.R., Cheng, Q., Hooley, R.J. (2014) Labeled protein recognition at a membrane bilayer interface by embedded synthetic receptors. Langmuir. 34:10161-10166. PMCID: PMC4176395
 

Nava M, Stoyanova IV, Cummings S, Stoyanov ES, Reed CA. (2014) The strongest Brønsted acid: protonation of alkanes by H(CHB(11)F(11)) at room temperature. Angew Chem Int Ed Engl. April 20;53(4):1131-4.  PMID: 24339386
 

Tosonian, S., Ruiz, C.J., Rios, A., Frias, E., Eichler, J. (2013) Synthesis, characterization, and stability of iron (III) complex ions possessing phenanthroline-based ligands. J. Inorg. Chem. 3:7-13. PMCID: PMC4219584
 

Williams, M., Villarreal, A., Bozhilov, K., Lin, S., Talbot, P. (2013) Metal and silicate particles including nanoparticles are present in electronic cigarette cartomizer fluid and aerosol.  PLoS ONE 8(3):e57987.  Doi:10.1371/journal.pone.0057987.g001. PMID: 23526962; PMCID: PMC3603976 
 

Cervantes S., Stout E. P., Prudhomme J., Engel S., Burton M., Cervantes M., Carter D., Chang Y.T, Hay M.E., Aalbersberg W., Kubanek J. and Le Roch KG.  (2012) High Content Live Cell Imaging Evaluation for the Discovery of New Antimalarial Natural Products. BMC Infect Dis. Jan 3;12:1. PMID: 22214291; PMCID: PMC3268092 
 

Djernes, K.E., Moshe, O., Mettry, M., Richards, D.D., and Hooley, R.J. (2011) Metal-coordinated water-soluble cavitands act as C-H oxidation catalysts. Org Letters. 13:788-791. PMID: 22273494; PMCID: PMC4014350
 

Park G, Servin JA, Turner GE, Altamirano L, Colot HV, Collopy P, Litvinkova L, Li L, Jones CA, Diala FG, Dunlap JC, Borkovich KA. (2011) Global analysis of serine-threonine protein kinase genes in Neurospora crassa. Eukaryot Cell.  Nov;10(11):1553-64. PMCID: PMC3209061
 

Smith HM, Ung N, Lal S, Courtier J. (2011) Specification of reproductive meristems requires the combined function of SHOOT MERISTEMLESS and floral integrators FLOWERING LOCUS T and FD during Arabidopsis inflorescence development. J Exp Bot. Jan;62(2):583-93. PMID: 20937733; PMCID: PMC3003808 
 

Ung N, Lal S, Smith HM. (2011) The role of PENNYWISE and POUND-FOOLISH in the maintenance of the shoot apical meristem in Arabidopsis. Plant Physiol. Jun;156(2):605-14. PMID: 21505100; PMCID: PMC3177262
 

Ung N, Smith HM. (2011) Regulation of shoot meristem integrity during Arabidopsis vegetative development. Plant Signal Behav. Aug;6(8):1250-2. doi: 10.4161/psb.6.8.16462. PMID: 21822063; PMCID: PMC3260737 
 

Chauke M, Malisch JL, Robinson C, de Jong TR and Saltzman W.  (2011)  Effects of reproductive status on behavioral and endocrine responses to acute stress in a biparental rodent, the California mouse (Peromyscus californicus).  Hormones and Behavior 60: 128-138. PMID:  21557946; PMCID: PMC4114965
 

Nava M, Reed CA. (2011) Triethylsilyl Perfluoro-Tetraphenylborate, [Et(3)Si][F(20)-BPh(4)], a widely used Non-Existent Compound. Organometallics. Sep 12;30(17):4798-4800. PMID: 21927530; PMCID: PMC3172150 
 

Owraghi M, Broitman-Maduro G, Luu T, Roberson H, and Maduro M. (2010). Roles of the Wnt effector POP-1/TCF in the C. elegans endomesoderm specification gene network. Developmental Biology 340: 209-221. PMID: 19818340; PMCID: PMC2854320
 

Lin S, Fonteno S, Satish S, Bhanu B, Talbot P. (2010) Video bioinformatics analysis of human embryonic stem cell colony growth. J Vis Exp.  May 20;(39). pii: 1933. PMID: 20495527; PMCID: PMC3152859  
 

Fonteno S, Weng JH, Talbot P. (2010) Comparison of the toxicity of smoke from conventional and harm reduction cigarettes using human embryonic stem cells. Toxicol Sci. Nov;118(1):202-12. PMID: 20702591; PMCID: PMC2955215
 

Nava MJ, Reed CA. (2010) High yield C-derivatization of weakly coordinating carborane anions. Inorg Chem. Jun 7;49(11):4726-8. PMID: 20450167; PMCID: PMC2883884 
 

A., Habib, A., Hatef, H., Joshi, M., Nguyen, L., and Mills, A.P. (2009) Production of Random DNA Oligomers for Scalable DNA Computing. Biotechnical J, 4, 119-128. PMID: 19156734; NIHMS 149158
 

Avelar A, Tham FS, Reed CA. (2009) Superacidity of boron acids H2(B12X12) (X = Cl, Br). Angew Chem Int Ed Engl. 48(19):3491-3. PMID: 19343754; PMCID: PMC4150390
 

Wang, S.S., Johnson, J.J., Hughes, B.S., Karabay, D.A., Bader, K.D., Austin, Faiola F, Wu YT, Pan S, Zhang K, Farina A, Martinez E. (2007) Max is acetylated by p300 at several nuclear localization residues. Biochem J. May 1;403(3):397-407. PMID: 17217336; PMCID: PMC1876387
 

Riveles, K., Tran, V., Roza, R., Kwan, D., Talbot, P. (2006) Smoke from Traditional Commercial, Harm Reduction, and Research Brand Cigarettes Impairs Oviductal Functioning in Hamsters (Merocricetus auratus) In Vitro. Human Reproduction, 22: 346-355. PMID: 17071822
 

Riveles, K, Roza, R, Talbot, P. (2005) Phenols, Quinolines, Indoles, Benzene, and 2-Cyclopenten-1-ones are Oviductal Toxicants in Cigarette Smoke. Toxicological Sciences, 86(1): 141-151. PMID: 15716489
 

Faiola, F. Liu, X., Lo, S., Pan, S., Zhang, K., Lymar, E., Farina, A., and Martinez, E.M. (2005) Dual regulation of c-Myc by p300 via acetylation-dependent control of Myc protein turnover and coactivation of Myc-induced transcription. Mol. Cell. Biol. 25:10220. PMCID: PMC12912429
 

Farina A, Faiola F, Martinez E. (2004) Reconstitution of an E box-binding Myc:Max complex with recombinant full-length proteins expressed in Escherichia coli. Protein. Expr Purif. Apr;34(2):215-22. PMID: 15003254; PMCID: PMC40044042
 

Riveles, K., Roza R., Arey J., and Talbot, P. (2004) Pyrazine derivatives in cigarette smoke inhibit hamster oviductal functioning. Reproductive Biology and Endocrinology, 2:23 doi:10.1186/1477-7827-2-23. PMID:15140253; PMCID: PMC428586 
 

Liu, M., Sims, D., Calarco, P., and Talbot, P. (2003) Biochemical heterogeneity, migration, and pre-fertilization release of mouse oocyte cortical granules. Reprod Biol Endocrinol, 1:77. PMCID: PMC305340 
 

Liu, X., Tesfai, J., Evrard, Y.A., Dent, S.Y.R., and Martinez, E. (2003) c-Myc transformation domain recruits the human STAGA complex and requires TRRAP and GCN5 acetylase activity for transcription activation. J. Biol. Chem. 278, 20405-20412. PMCID: PMC4031917